Exploring the Russia Report using R

The UK’s Intelligence and Security Committee’s report into Russian activity in the UK was finally released a few days ago.

Here’s my exploration of redactions in the report, using R. Some highlights below.

One of the best predictors of whether a sentence will have a redaction is what organisations are mentioned in the sentence:


According to a sentiment analysis, the angriest sentences are on page 11 (PDF page 18):


Here’s a word cloud of sentences with a redaction, against the organisations(s) mentioned…


Choropleths in R – example using the 2020 Russian constitutional referendum

Choropleth maps use shading to represent quantities and are common in the press. I gave them a go in R, using the rvest package to scrape the results of the 2020 Russian constitutional referendum and the raster package piped through tidyverse tools to map them.

The code is on my GitHub repo.

Some of the fun I encountered along the way (details in the repo):

  • The CRAN version of raster didn’t work, but the latest on GitHub was fine and it’s easy to install this directly from R.
  • The Russian regions names in the raster map of Russia didn’t always match those on the Wikipedia article. I tried fuzzy matching by edit distance, which did a pretty good job but I still had to match some manually (e.g., “Sakha” and “Yakutia” are different names for the same place and a long edit distance from each other). I suspect it would have been easier just to sort both lists alphabetically and match manually from the start!
  • This warning is a worry: “support for gpclib will be withdrawn from maptools at the next major release” – I hope something comes along to replace it.
  • Lots of the examples of maps online are for the US and one basic problem is what projection to use. The mapproj package is fab for this.

A Little Fable (Kleine Fabel) – Franz Kafka

“Alas”, said the mouse, “the whole world is growing smaller every day. At the beginning it was so big that I was afraid, I kept running and running, and I was glad when I saw walls far away to the right and left, but these long walls have narrowed so quickly that I am in the last chamber already, and there in the corner stands the trap that I am running into.”

“You only need to change your direction,” said the cat, and ate it up.

—Franz Kafka, a short story written some time between 1917 and 1923

WTF is psychosocial studies?

Psychosocial studies is at the intersection of arts, psychology, psychoanalysis, cultural studies, social work, sociology – and a huge number of related fields.  Actually maybe it’s the set union of those fields (and more) too. I think this diagram illustrates the spirit of the relationships (Figure 8 from Simonetto and Auber’s paper on undrawable Euler diagrams):

A very complex Euler diagram of 8 overlapping shapes in multiple colours

Efforts to write manifestos of psychosocial studies as an inter/transdiscipline have accelerated since the 1990s. A common theme is that psychological life (conscious and unconscious) is interwoven with social life. For such a broad programme, there are inevitably rows about what exactly psychosocial studies “is” and at times the debates seem to reflect academic power struggles more than substance (not unlike the qual versus quant rows).

Diet or full fat psychosocial?

Sasha Roseneil (2014) took a helpful empirical approach, developing a taxonomy of broad genres of ESRC-funded projects which used the term “psychosocial”.  What did the researchers on these projects seem to mean?

Psychosocial “lite” research uses “psychosocial” as an adjective to describe linking social and psychological variables, like social stressors and individual wellbeing. This seems to fit the study by Barr et al. (2016) which explored the effect of welfare policy changes on mental ill-health (though the researchers didn’t use the term “psychosocial” and the lead author was in a Department of Public Health and Policy).

The “middle ground” of psychosocial research consists of work that takes this a step further to explore (p. 130)

“emotions or emotional life, or had a more expansive sociological/societal understanding of the social than ‘psychosocial lite’ research”

I’m not entirely sure I’d be able to distinguish “lite” from “middle ground” – maybe “thick description” or Verstehen are beginning to creep in? In any case, both stay within or combine ideas from existing disciplines like psychology and sociology.

The “strong” programme differs from these two in that research (p. 130)

“articulated either an implicit or explicit challenge to the disciplinary divisions between psychology and sociology, were concerned with the mutual constitution of the psychic and the social and saw the theoretical/methodological approach that they were taking to the research as ‘psychosocial’ (rather than using the word to qualify other concepts).”

Pledging allegiance to the new discipline is necessary, according to this “strong” account, alongside the need to foreground the “mutual constitution” of psy and social, rather than explaining one in terms of the other. So no explaining social life through Big Five personality scores or IQ.


This “strong” definition reminds me of work by philosophers Andy Clark and David Chalmers (1998) on the extended mind. They begin by arguing that our concept of self “outstrips the boundaries of consciousness”. This is easy to see since, for example, we are only consciously aware of a small number of our beliefs at any given time. We still have those beliefs somewhere, somehow, and they pop into consciousness again when triggered by context. We also scribble in notebooks (and these days tap at apps) so that we don’t forget stuff. Again these memories exist outside consciousness, not unlike dormant beliefs, but additionally the scribbles and app algorithms are “beyond the skin”. These external aids are an important part of us and how we think and act. Hence, Clark and Chalmers argue, selves are “best regarded as an extended system, a coupling of biological organism and external resources”.

Sounds psychosocial to me, though developed outside a formal psychosocial studies frame. (Maybe it’s more biopsychomaterial studies?)

Another example comes from Kusch (1999, p. 359), writing in a Science and Technology Studies (STS) tradition. He sketches a familiar story of how social processes shape brains and change how we respond to the world, arguing that therefore

“at least some states of the brain might well be called social states. They are social because they are real artefacts of our culture, and social also because they predispose us to differ in the intensity, quality, and duration of some of our sensations” (emphasis original).

Yet another expression of the interwoven nature of psy and social comes from Erich Fromm (originally published 1932):

“The thesis that psychology only deals with the individual while sociology only deals with ‘society’ is false. For just as psychology always deals with a socialized individual, so sociology always deals with a group of individuals whose psychic structure and mechanisms must be taken into account.”

Though perhaps this particular statement isn’t interwoven enough for “strong” psychosocial.


An idea that recurs in psychosocial studies is that researchers should develop critical theories. Taking Nancy Fraser’s (1985) conceptualisation (from outside psychosocial studies), there is no empirical difference between a critical and a non-critical theory. There is a clear political difference: a critical theory clarifies processes oppressing a social group and suggests action. It takes as obvious that doing so is important. Jenkins’ (2018) development of a norm-relevancy account of gender is a good example of this genre of critical theorising. Jenkins begins with a statement of the aims of trans rights movements, but does not attempt to justify those aims (Jenkins, 2018, p. 716):

“Although I am fully convinced of the appropriateness of the aims of the trans rights movements, I make no claim to have justified those aims here. I merely seek to establish the concept of gender identity that is required to advance those aims.”

This is critical theory-infused analytical philosophy – outside psychosocial studies.

So WTF is psychosocial studies?

Psychosocial studies is undefinable, in my view. Any attempt will include a huge number of other disciplines (or at least researchers in those disciplines) using psy and social concepts simultaneously. I don’t think it matters; people seem to be able to do their psychosocial research (or philosophy, sociology, art, etc.) without pledging allegiance to the psychosocial, hand on any of the major manifestos. But researchers who want to, say, reduce all societies’ problems to individuals’ characteristics are more likely to be found elsewhere, so the “interwoven” criterion of psy and social does help eliminate some research from the hyperdimensional Euler diagrams.

Keeping an eye on London

Broadcast media tends to be slow at reporting on events, so while you wait you can find clues for what may be going on via:

  • ADSBexchange.com, “the worlds largest co-op of ADS-B/Mode S/MLAT feeders, and the world’s largest public source of unfiltered flight data”
  • Advisory Circular London, “Bot that tweets about aircraft flying in circles over the London area”
  • Webcams of London, e.g., Westminster Bridge and the view from the Shard (looking west and east) – including archived footage
  • TfL JamCam – shows traffic cams from across London, also including archives
  • Twitter search for London

PHQ-9 “over-diagnosis” paper shows that arithmetic works

A recent paper by Levis et al. (2020) systematically reviews studies looking at depression prevalence in two ways: one using a structured assessment completed by a professional (SCID) and the other using a questionnaire completed by study participants (PHQ-9). The authors conclude that “PHQ-9 ≥10 substantially overestimates depression prevalence.” But this was entirely predictable.

Mean SCID-prevalence was 12.1%.

Mean PHQ-9 prevalence (using a score of 10 or above to decide that someone has depression) was 24.6%.

This is almost exactly what arithmetic predicts; my back-of-envelope estimate of what PHQ-9 would say (see below) gives 23.8%, using estimates of PHQ’s sensitivity and sensitivity from a meta-analysis (88% and 85%, respectively) and the SCID-prevalence found in the review (12.1%).

So the paper’s results are unsurprising.

PHQ-9 (and any other screening questionnaire) gives better predictions in groups with higher rates of depression, such as people who have asked for a GP appointment because they are worried about their mental health.

No clinical decisions – such as whether to accept someone for treatment – should be made on the basis of nine tick-box answers alone. Questionnaires can also miss people who need treatment.

Screening questionnaires are often designed to over-diagnose rather than risk missing people who need treatment, under the assumption that a proper follow-up assessment will be carried out.

When reporting condition prevalence, the psychometric properties of measures should be provided, including what “gold standard” they have been validated against, and the chosen clinical threshold.

Explore Positive/Negative Predictive Values (PPV and NPV) using this app.


Back of envelope

P(SCID) = .121
P(PHQ | SCID) = .88
P(not-PHQ | not-SCID) = .85
P(PHQ | not-SCID) = 1 – P(not-PHQ | not-SCID) = .15

= .88 * .121
= .10648

P(PHQ & not-SCID) = P(PHQ | not-SCID) * P(not-SCID)
= (1 – .85) * (1 – .121)
= .13185

P(PHQ) = P(PHQ & SCID) + P(PHQ & not-SCID)
= .10648 + .13185
= 0.23833


Thanks Chris, for pointing out the typo!

Qual and quant – subjective and objective?

“… tensions between quantitative and qualitative methods can reflect more on academic politics than on epistemology. Qualitative approaches are generally associated with an interpretivist position, and quantitative approaches with a positivist one, but the methods are not uniquely tied to the epistemologies. An interpretivist need not eschew all numbers, and positivists can and do carry out qualitative studies (Lin, 1998). ‘Quantitative’ need not mean ‘objective’. Subjective approaches to statistics, for instance Bayesian approaches, assume that probabilities are mental constructions and do not exist independently of minds (De Finetti, 1989). Statistical models are seen as inhabiting a theoretical world which is separate to the ‘real’ world though related to it in some way (Kass, 2011). Physics, often seen as the shining beacon of quantitative science, has important examples of qualitative demonstrations in its history that were crucial to the development of theory (Kuhn, 1961).”

Fugard and Potts (2015, pp. 671-672)

Cyber digital interactive argh – moving teaching online

The courses I teach at Birkbeck use Moodle for uploading slides and other material and I use online forums a bit for follow-up and discussion between sessions, but the programmes are very much face-to-face. Birkbeck is “London’s evening university” and a strength of this is that students who work or have other commitments during the day can physically come to class. Students do readings, discuss these in class, write essays and other projects. In a stats course I teach, students analyse data using R so it’s a bit more techie but still primarily taught face-to-face in a computer lab.

So the coronavirus pandemic has been a huge shock – especially as it came just after a fortnight of jury service and UCU strike action. ARGH.

Here’s where I’m up to, a little over a week into work-from-home. I’m sharing here in case helpful!

Overall “strategy”

Firstly, I accepted that I’m overwhelmed and a bit terrified. Can I do any of this digitally? How will it feel? Oh god I hate the sound of my voice.

I’m working under the assumption that there’s a chance the academic year 2020/21 will be online-only; that this is a marathon not a sprint, so not to burn out!

Luckily I don’t have any more group teaching this academic year so most contact is individual, e.g., project supervision and personal tutor support. However, it quickly became apparent from a questionnaire (see below) that I will need to make an effort to support all students to continue to feel part of the programme and to facilitate students building support networks now they don’t see each other in class. I will also need to support a group with revision prep for a (now take-home) exam.

First steps

I started with the familiar – an open source audio recorder and editor called Audacity which I used to play with years ago. I used this to record myself reading a message to students (which was also sent as text) and to make it slightly less painful (for me anyway) mixed this with some gentle ambient by Brian Eno.

Another familiar: questionnaires. I made a short anonymous “check in” questionnaire with the following questions:

  1. What app do you prefer to use for individual tutorials/other one-to-one meetings (including phone!)
  2. Do you prefer audio, video, or text-only chat?
  3. How well do you think you’re keeping up with deadlines?
  4. Open text comment – how are things generally?

In the group I asked, there was about a 50-50 split between a preference for audio-only and video chat, so I am sure to ask about this and to reinforce that people have different preferences and that’s okay. Nobody wanted live text-chat, but I assume somebody somewhere will, so it’s worth bearing this in mind as an option.

The open text responses were most helpful – and moving: students shared how the pandemic is affecting them, changes to caring responsibilities and employment workload, their worries, how they feel disconnected from university.

Experiments with the digital

Here is where I am up to:

Whole programme check in using Blackboard Collaborate video conferencing

This initial session was unstructured and badged as such: I’m flailing around; let’s see what happens. I made some slides with key results from the survey – mostly as an excuse to see how to share them using Collaborate.

It turned out to be helpful and amusing to share the online whiteboard which anyone could write to. Some students started to write notes there about what was being discussed (alongside noughts and crosses). A text chat thread started with someone sharing an article.

Incidentally, I was pleasantly surprised that it was possible to dial in using a telephone – this seemed to work fine.

The next whole-programme meeting is in a fortnight (following a student’s suggestion) and will have the following structure:

  1. Whole group chat – how are people doing?
  2. Whole group Q&A – if you have any questions for me about programme stuff
  3. Breakout groups to use however students want; the magic of randomness will determine with whom students chat

I have allocated 1.5 hours for all this but was clear that students can leave whenever they want.

Support group roulette

The idea for this emerged from the whole-group chat with all (taught postgrad) students. Those who want to join a group complete a form with their name, email, year of study (if part-time), and can share any other comment to constrain the randomisation (free-text box).

I’ll randomise to groups and share contact details to each group – group members will then decide themselves how to communicate.

Interactive revision session

Next Monday I will try a more formal revision session, including PowerPoint, for the stats course and plan to record this so others can view it later.

Queering anarchism

Image result for queering anarchism

If you’re looking for something to read over the next few weeks as we deal with the coronavirus (COVID-19) pandemic, try Queering Anarchism.

Anarchists are a varied bunch but share a desire for social organisation in the absence of imposed centralised authority. There are anarchist ideas floating around in current society which become apparent when it feels like something is self-organising or when people take it in turns to lead across formal leadership hierarchies. “Queer” is often used as a synonym of LGBT+ but it can also mean a stance of opposition to dominant societal norms – usually concerning sexuality, relationships, and gender. It’s deliberately vague, encouraging a continuous critical stance. It’s also used as a verb, “queering”, which can be thought of as playful mode of theorising which critiques all we take for granted. This book takes these two contested terms of “queering” and “anarchism” and uses them to explore a range of topics including love, feminism, migration, non-monogamy, gender identity, disability. Give it a go for ideas to try to out or to inspire heated arguments with your pandemic cohabitants.